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GEO accession:
Sample GSM12399
Query DataSets for GSM12399
Status
Public on Nov 25, 2003
Title
C4 Renal Clear Cell Carcinoma U133A
Sample type
RNA
Source name
Trizol isolation of total RNA from Renal Clear Cell Carcinoma tissue
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Age = 65; Gender = Male; Left Kidney; Tumor Type = clear cell; Tumor Fuhrman Grade = 1; Tumor Capsule Penetration = true; Tumor Perinephric Fat Invasion = false; Tumor Renal Sinus Invasion = false; Tumor Renal Vein Invasion = false; Tumor Location: upper; Scaling Target = 500; Scaling Factor = 4.02; Raw Q = 4.35; Noise = 9.23; Background = 139.27.
Keywords = kidney
Keywords = renal
Keywords = RCC
Keywords = carcinoma
Keywords = cancer
Lot batch = 2004638
Submission date
Oct 23, 2003
Last update date
May 28, 2005
Contact name
Marc E. Lenburg
E-mail(s)
mlenburg@bu.edu
Phone
617-414-1375
Fax
617-414-1646
URL
http://gg.bu.edu
Organization name
Boston University School of Medicine
Department
Genetics and Genomics
Street address
715 Albany Street, E613B
City
Boston
State/province
MA
ZIP/Postal code
02130
Country
USA
Platform ID
GPL96
Series (1)
GSE781
Normal and Renal Cell Carcinoma Kidney Tissue, Human
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Statistical Algorithm (mean scaled to 500)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call with Alpha1 = 0.05, Alpha2 = 0.065
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
334.3
A
AFFX-BioB-M_at
587.9
P
AFFX-BioB-3_at
318.9
P
AFFX-BioC-5_at
1046.9
P
AFFX-BioC-3_at
463.2
P
AFFX-BioDn-5_at
766.4
P
AFFX-BioDn-3_at
5983.2
P
AFFX-CreX-5_at
9623.1
P
AFFX-CreX-3_at
13290.2
P
AFFX-DapX-5_at
19.4
A
AFFX-DapX-M_at
62.7
A
AFFX-DapX-3_at
16.2
A
AFFX-LysX-5_at
24.8
A
AFFX-LysX-M_at
25.2
A
AFFX-LysX-3_at
29.2
A
AFFX-PheX-5_at
16.1
A
AFFX-PheX-M_at
15
A
AFFX-PheX-3_at
26.8
A
AFFX-ThrX-5_at
20
A
AFFX-ThrX-M_at
32.1
A
Total number of rows:
22283
Table truncated, full table size
404 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM12399.CEL.gz
3.5 Mb
(ftp)
(http)
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