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Sample GSM124385 Query DataSets for GSM124385
Status Public on Oct 31, 2008
Title Foxa2-mutant-2-E7.5 (U74)
Sample type RNA
 
Source name E7.5 EMBRYO EPIBLAST ONLY
Organism Mus musculus
Characteristics Embryos derived by tetraploid complementation technique using Foxa2 homozygous null ES cells.
Treatment protocol EXTRA-EMBRYONIC REGION OF EMBRYO REMOVED PRIOR TO EXTRACTION
Extracted molecule total RNA
Extraction protocol TRIZOL REAGENT
Label biotin
Label protocol AFFYMETRIX GeneChip® T7-Oligo(dT) Promoter Primer Kit
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description E7.5 POOLED EMBRYOS: n=48
Stages between mid-streak and headfold according to Downs & Davies
Data processing Affymetrix MAS5.0, target normalized to 1000
 
Submission date Aug 01, 2006
Last update date Oct 31, 2008
Contact name Owen James Tamplin
Organization name University of Wisconsin-Madison
Department Cell and Regenerative Biology
Lab Tamplin
Street address 1111 Highland Ave
City Madison
State/province WI
ZIP/Postal code 53705
Country USA
 
Platform ID GPL81
Series (1)
GSE5424 Microarray analysis of Foxa2 mutant mouse embryos

Data table header descriptions
ID_REF
VALUE NORMALIZED BACKGROUND-CORRECTED SIGNAL
ABS_CALL ABSENT/PRESENT CALL VALUE
DETECTION P-VALUE PROBABILITY FOR ABSENT/PRESENT CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 6.6 A 0.814869
AFFX-MurIL10_at 15.7 A 0.455413
AFFX-MurIL4_at 10 A 0.165861
AFFX-MurFAS_at 3.9 A 0.659339
AFFX-BioB-5_at 200 P 0.00034
AFFX-BioB-M_at 487.3 P 0.000044
AFFX-BioB-3_at 230.2 P 0.000052
AFFX-BioC-5_at 645.8 P 0.00006
AFFX-BioC-3_at 540.6 P 0.000044
AFFX-BioDn-5_at 698.4 P 0.000044
AFFX-BioDn-3_at 3135.1 P 0.00007
AFFX-CreX-5_at 7288 P 0.000044
AFFX-CreX-3_at 9473.7 P 0.000044
AFFX-BioB-5_st 23.6 A 0.250796
AFFX-BioB-M_st 52.9 A 0.185131
AFFX-BioB-3_st 37 A 0.41138
AFFX-BioC-5_st 5.7 A 0.804734
AFFX-BioC-3_st 3.8 A 0.52976
AFFX-BioDn-5_st 83.4 M 0.058444
AFFX-BioDn-3_st 122.4 P 0.00762

Total number of rows: 12488

Table truncated, full table size 315 Kbytes.




Supplementary file Size Download File type/resource
GSM124385_U74A2_021903_HL04T_LH.CEL.gz 2.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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