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Sample GSM1243881 Query DataSets for GSM1243881
Status Public on Jan 01, 2014
Title 1188
Sample type RNA
Source name Tumor
Organism Homo sapiens
Characteristics tissue: Ovary
Stage: III
classification: chemotherapy sensitive
Growth protocol Fresh frozen tumour samples stored at -80 C.
Extracted molecule total RNA
Extraction protocol RNA was extracted as usiing Qiagen Rneasy mini kit as per the manufacturer's protocol
Label Biotin
Label protocol GeneChip Two-Cycle Target Labeling and Control Reagents (Affymetrix, Santa Clara, CA)
Hybridization protocol 500 nanograms of total RNA was used for cDNA synthesis using GeneChip 3′ IVT Express Kit (Affymetrix Inc, Santa Clara, CA USA.)
Scan protocol Scanning and probe quantification of the gene chips was performed on an AffymetrixGeneChip Scanner 3000 as per the manufacturer's instructions.
Data processing Normalization of the microarray data was conducted using MAS5 algorithm from the affy Bioconductor package.
Submission date Oct 17, 2013
Last update date Jan 01, 2014
Contact name Madhuri Koti
Organization name Queen's University
Department Biomedical and Molecular Sciences
Street address Botterell Hall, Stuart Street
City Kingston
State/province Ontario
ZIP/Postal code K7P3E3
Country Canada
Platform ID GPL570
Series (1)
GSE51373 Gene expression data from high grade serous ovarian cancer

Data table header descriptions

Data table
1007_s_at 8383.086335
1053_at 670.6312966
117_at 489.6682757
121_at 2952.580937
1255_g_at 30.75403459
1294_at 999.4996746
1316_at 162.6079144
1320_at 53.99354121
1405_i_at 3037.990377
1431_at 235.6726295
1438_at 118.8806389
1487_at 1231.532478
1494_f_at 126.2149993
1552256_a_at 1186.775576
1552257_a_at 1061.228143
1552258_at 200.7929704
1552261_at 281.5176035
1552263_at 288.9713571
1552264_a_at 307.1340265
1552266_at 110.3510877

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.

Supplementary file Size Download File type/resource
GSM1243881_U133Plus2_S1188.CEL.gz 4.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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