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Sample GSM1243891 Query DataSets for GSM1243891
Status Public on Jan 01, 2014
Title 1703
Sample type RNA
Source name Tumor
Organism Homo sapiens
Characteristics tissue: Ovary
Stage: IIIc
classification: chemotherapy resistant
Growth protocol Fresh frozen tumour samples stored at -80 C.
Extracted molecule total RNA
Extraction protocol RNA was extracted as usiing Qiagen Rneasy mini kit as per the manufacturer's protocol
Label Biotin
Label protocol GeneChip Two-Cycle Target Labeling and Control Reagents (Affymetrix, Santa Clara, CA)
Hybridization protocol 500 nanograms of total RNA was used for cDNA synthesis using GeneChip 3′ IVT Express Kit (Affymetrix Inc, Santa Clara, CA USA.)
Scan protocol Scanning and probe quantification of the gene chips was performed on an AffymetrixGeneChip Scanner 3000 as per the manufacturer's instructions.
Data processing Normalization of the microarray data was conducted using MAS5 algorithm from the affy Bioconductor package.
Submission date Oct 17, 2013
Last update date Jan 01, 2014
Contact name Madhuri Koti
Organization name Queen's University
Department Biomedical and Molecular Sciences
Street address Botterell Hall, Stuart Street
City Kingston
State/province Ontario
ZIP/Postal code K7P3E3
Country Canada
Platform ID GPL570
Series (1)
GSE51373 Gene expression data from high grade serous ovarian cancer

Data table header descriptions

Data table
1007_s_at 10637.1086
1053_at 417.1078144
117_at 259.8671554
121_at 6196.165937
1255_g_at 29.39604973
1294_at 1323.516902
1316_at 68.92462235
1320_at 60.73226734
1405_i_at 573.4071081
1431_at 100.998738
1438_at 176.0649002
1487_at 895.8026986
1494_f_at 74.75874751
1552256_a_at 1007.270249
1552257_a_at 944.7020937
1552258_at 121.2816114
1552261_at 1066.371431
1552263_at 295.7232969
1552264_a_at 198.7544394
1552266_at 101.8450425

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.

Supplementary file Size Download File type/resource
GSM1243891_U133Plus2_R1703.CEL.gz 4.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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