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Sample GSM1243895 Query DataSets for GSM1243895
Status Public on Jan 01, 2014
Title 1296
Sample type RNA
Source name Tumor
Organism Homo sapiens
Characteristics tissue: Ovary
Stage: II
classification: chemotherapy sensitive
Growth protocol Fresh frozen tumour samples stored at -80 C.
Extracted molecule total RNA
Extraction protocol RNA was extracted as usiing Qiagen Rneasy mini kit as per the manufacturer's protocol
Label Biotin
Label protocol GeneChip Two-Cycle Target Labeling and Control Reagents (Affymetrix, Santa Clara, CA)
Hybridization protocol 500 nanograms of total RNA was used for cDNA synthesis using GeneChip 3′ IVT Express Kit (Affymetrix Inc, Santa Clara, CA USA.)
Scan protocol Scanning and probe quantification of the gene chips was performed on an AffymetrixGeneChip Scanner 3000 as per the manufacturer's instructions.
Data processing Normalization of the microarray data was conducted using MAS5 algorithm from the affy Bioconductor package.
Submission date Oct 17, 2013
Last update date Jan 01, 2014
Contact name Madhuri Koti
Organization name Queen's University
Department Biomedical and Molecular Sciences
Street address Botterell Hall, Stuart Street
City Kingston
State/province Ontario
ZIP/Postal code K7P3E3
Country Canada
Platform ID GPL570
Series (1)
GSE51373 Gene expression data from high grade serous ovarian cancer

Data table header descriptions

Data table
1007_s_at 9005.96113
1053_at 814.0773148
117_at 213.4894219
121_at 9985.165643
1255_g_at 8.343402273
1294_at 1387.234809
1316_at 199.2657681
1320_at 24.40339813
1405_i_at 2461.681093
1431_at 468.166343
1438_at 214.0172153
1487_at 713.5090746
1494_f_at 116.4249501
1552256_a_at 1003.490816
1552257_a_at 859.0935974
1552258_at 100.4716665
1552261_at 518.2575521
1552263_at 100.3422184
1552264_a_at 174.014213
1552266_at 59.67865825

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.

Supplementary file Size Download File type/resource
GSM1243895_U133Plus2_S1296.CEL.gz 4.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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