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GEO accession:
Sample GSM1244198
Query DataSets for GSM1244198
Status
Public on Oct 18, 2013
Title
D61B
Sample type
RNA
Source name
Patient biopsy
Organism
Homo sapiens
Characteristics
tissue: biopsy
Treatment protocol
not applicable
Growth protocol
not applicable
Extracted molecule
total RNA
Extraction protocol
RNA extracted with miRNeasy Qiagen kit for plasma samples and mirVana (Life Technologies) for biopsies. RNA was analyzed by NanoDrop and Bioanalyzer.
Label
biotin
Label protocol
Biotinylated RNA were prepared according to the standard Affymetrix protocol
Hybridization protocol
FS450_002
Scan protocol
miRNA3.0
Data processing
RMA-DABG,background substraction, log2 data transformation
Submission date
Oct 17, 2013
Last update date
Oct 18, 2013
Contact name
Dolors Sanchez-Izquierdo
E-mail(s)
arrays_service@iislafe.es
Phone
+34 961973400
Organization name
IIS La Fe
Department
Genomics Unit
Lab
Arrays Service
Street address
Avda. Campanar 21
City
Valencia
State/province
Valencia
ZIP/Postal code
46009
Country
Spain
Platform ID
GPL16384
Series (1)
GSE51375
Assesing an improved protocol for plasma microRNA extraction
Data table header descriptions
ID_REF
VALUE
log2 RMA-DABG Signal
ABS_CALL
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
14q0_st
1.178267
A
0.1959321
14qI-1_st
0.8742463
A
0.8423387
14qI-1_x_st
0.9752736
A
0.2212625
14qI-2_st
0.7584612
A
0.476088
14qI-3_x_st
1.227803
P
0.01878808
14qI-4_st
1.265884
A
0.1189245
14qI-4_x_st
0.8799859
A
0.6580892
14qI-5_st
1.0097
A
0.2361149
14qI-6_st
0.6199619
A
0.9095556
14qI-6_x_st
1.051137
A
0.3185633
14qI-7_st
1.262884
A
0.07308143
14qI-8_st
1.088279
A
0.2014117
14qI-8_x_st
1.687546
P
0.01009217
14qI-9_x_st
1.513796
A
0.1722316
14qII-10_st
0.7830791
A
0.9284569
14qII-10_x_st
1.365652
P
0.03139779
14qII-11_st
1.371596
A
0.1742206
14qII-11_x_st
0.939715
A
0.8690151
14qII-12_st
1.044657
A
0.5080083
14qII-12_x_st
1.534959
P
0.003526896
Total number of rows:
25015
Table truncated, full table size
937 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1244198_D61B_miRNA-3_0_.CEL.gz
852.7 Kb
(ftp)
(http)
CEL
Processed data included within Sample table
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