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GEO accession:
Sample GSM1244202
Query DataSets for GSM1244202
Status
Public on Oct 18, 2013
Title
D101B
Sample type
RNA
Source name
Patient biopsy
Organism
Homo sapiens
Characteristics
tissue: biopsy
Treatment protocol
not applicable
Growth protocol
not applicable
Extracted molecule
total RNA
Extraction protocol
RNA extracted with miRNeasy Qiagen kit for plasma samples and mirVana (Life Technologies) for biopsies. RNA was analyzed by NanoDrop and Bioanalyzer.
Label
biotin
Label protocol
Biotinylated RNA were prepared according to the standard Affymetrix protocol
Hybridization protocol
FS450_002
Scan protocol
miRNA3.0
Data processing
RMA-DABG,background substraction, log2 data transformation
Submission date
Oct 17, 2013
Last update date
Oct 18, 2013
Contact name
Dolors Sanchez-Izquierdo
E-mail(s)
arrays_service@iislafe.es
Phone
+34 961973400
Organization name
IIS La Fe
Department
Genomics Unit
Lab
Arrays Service
Street address
Avda. Campanar 21
City
Valencia
State/province
Valencia
ZIP/Postal code
46009
Country
Spain
Platform ID
GPL16384
Series (1)
GSE51375
Assesing an improved protocol for plasma microRNA extraction
Data table header descriptions
ID_REF
VALUE
log2 RMA-DABG Signal
ABS_CALL
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
14q0_st
1.044013
A
0.1189549
14qI-1_st
1.29825
A
0.08347908
14qI-1_x_st
1.007575
A
0.1582297
14qI-2_st
0.8150871
A
0.9672936
14qI-3_x_st
1.1622
P
0.0328943
14qI-4_st
1.17623
A
0.272834
14qI-4_x_st
0.7834288
A
0.9550993
14qI-5_st
0.6489145
A
0.5689266
14qI-6_st
1.01666
A
0.3786846
14qI-6_x_st
1.104706
A
0.5201353
14qI-7_st
1.121425
A
0.1345144
14qI-8_st
1.245541
P
0.03299727
14qI-8_x_st
2.018803
P
0.000599556
14qI-9_x_st
1.047699
A
0.4198091
14qII-10_st
0.9356903
A
0.5898651
14qII-10_x_st
1.399076
P
0.05829575
14qII-11_st
1.027916
A
0.8574002
14qII-11_x_st
1.124871
A
0.7578646
14qII-12_st
2.443091
P
6.32E-05
14qII-12_x_st
3.179736
P
3.60E-06
Total number of rows:
25015
Table truncated, full table size
935 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1244202_D101B_miRNA-3_0_.CEL.gz
813.9 Kb
(ftp)
(http)
CEL
Processed data included within Sample table
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