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GEO accession:
Sample GSM1244205
Query DataSets for GSM1244205
Status
Public on Oct 18, 2013
Title
C44B
Sample type
RNA
Source name
Control biopsy
Organism
Homo sapiens
Characteristics
tissue: biopsy
Treatment protocol
not applicable
Growth protocol
not applicable
Extracted molecule
total RNA
Extraction protocol
RNA extracted with miRNeasy Qiagen kit for plasma samples and mirVana (Life Technologies) for biopsies. RNA was analyzed by NanoDrop and Bioanalyzer.
Label
biotin
Label protocol
Biotinylated RNA were prepared according to the standard Affymetrix protocol
Hybridization protocol
FS450_002
Scan protocol
miRNA3.0
Data processing
RMA-DABG,background substraction, log2 data transformation
Submission date
Oct 17, 2013
Last update date
Oct 18, 2013
Contact name
Dolors Sanchez-Izquierdo
E-mail(s)
arrays_service@iislafe.es
Phone
+34 961973400
Organization name
IIS La Fe
Department
Genomics Unit
Lab
Arrays Service
Street address
Avda. Campanar 21
City
Valencia
State/province
Valencia
ZIP/Postal code
46009
Country
Spain
Platform ID
GPL16384
Series (1)
GSE51375
Assesing an improved protocol for plasma microRNA extraction
Data table header descriptions
ID_REF
VALUE
log2 RMA-DABG Signal
ABS_CALL
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
14q0_st
1.402123
P
0.002066843
14qI-1_st
1.000672
A
0.7404236
14qI-1_x_st
1.176649
A
0.1600549
14qI-2_st
1.016734
A
0.4859696
14qI-3_x_st
1.381728
P
0.004434743
14qI-4_st
1.20546
A
0.1811953
14qI-4_x_st
0.8515761
A
0.2988333
14qI-5_st
1.007357
A
0.1096029
14qI-6_st
0.7362931
A
0.6714254
14qI-6_x_st
0.7689292
A
0.8052852
14qI-7_st
1.096147
A
0.1233218
14qI-8_st
1.493653
P
0.001742426
14qI-8_x_st
2.490149
P
6.07E-05
14qI-9_x_st
1.26384
A
0.2914358
14qII-10_st
1.045044
A
0.6270103
14qII-10_x_st
1.035734
A
0.4060801
14qII-11_st
2.081104
P
0.01314855
14qII-11_x_st
1.665449
A
0.2287953
14qII-12_st
1.114781
A
0.4767705
14qII-12_x_st
1.507758
P
0.008617951
Total number of rows:
25015
Table truncated, full table size
937 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1244205_C44B_miRNA-3_0_.CEL.gz
802.0 Kb
(ftp)
(http)
CEL
Processed data included within Sample table
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