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Sample GSM1245250 Query DataSets for GSM1245250
Status Public on Jan 01, 2014
Title 36 hpf ethanol
Sample type RNA
 
Source name 36 hpf eyes ethanol
Organism Danio rerio
Characteristics tissue: embryonic eye
treatment: none
developmental stage: 36 hpf
Growth protocol 28.5 deg C
Extracted molecule total RNA
Extraction protocol total RNA qiagen from dissected eye tissues
Label biotin
Label protocol Affymetrix protocol
 
Hybridization protocol Affymetrix protocol
Scan protocol Affymetrix protocol
Data processing MAS5
 
Submission date Oct 18, 2013
Last update date Jan 01, 2014
Contact name Deborah Lynn Stenkamp
E-mail(s) dstenkam@uidaho.edu
Phone 208-885-8963
Organization name University of Idaho
Department Biological Sciences
Street address 875 Perimeter Drive, MS 3051
City Moscow
State/province Idaho
ZIP/Postal code 83844-3051
Country USA
 
Platform ID GPL1319
Series (1)
GSE51427 Eye-Specific Gene Expression following Embryonic Ethanol Exposure in Zebrafish: Roles for Heat Shock Factor 1

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 244.758 P 4.42873e-05
AFFX-BioB-M_at 446.062 P 4.42873e-05
AFFX-BioB-3_at 364.438 P 5.16732e-05
AFFX-BioC-5_at 757.42 P 4.42873e-05
AFFX-BioC-3_at 351.309 P 4.42873e-05
AFFX-BioDn-5_at 938.62 P 4.42873e-05
AFFX-BioDn-3_at 1967.21 P 4.42873e-05
AFFX-CreX-5_at 3416.87 P 4.42873e-05
AFFX-CreX-3_at 4728.61 P 4.42873e-05
AFFX-DapX-5_at 0.606681 A 0.749204
AFFX-DapX-M_at 0.24544 A 0.98333
AFFX-DapX-3_at 0.994426 A 0.574038
AFFX-LysX-5_at 2.05994 A 0.440646
AFFX-LysX-M_at 3.82185 A 0.131361
AFFX-LysX-3_at 0.737995 A 0.737173
AFFX-PheX-5_at 0.74897 A 0.760937
AFFX-PheX-M_at 0.988437 A 0.760937
AFFX-PheX-3_at 2.68589 A 0.368438
AFFX-ThrX-5_at 0.524914 A 0.834139
AFFX-ThrX-M_at 1.55156 A 0.287743

Total number of rows: 15617

Table truncated, full table size 577 Kbytes.




Supplementary file Size Download File type/resource
GSM1245250_Bhavani-7-36hpf-E-020609.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM1245250_Bhavani-7-36hpf-E-020609.CHP.gz 85.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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