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GEO accession:
Sample GSM1245252
Query DataSets for GSM1245252
Status
Public on Jan 01, 2014
Title
48 hpf ethanol
Sample type
RNA
Source name
48 hpf eyes ethanol
Organism
Danio rerio
Characteristics
tissue: embryonic eye
treatment: ethanol
developmental stage: 48 hpf
Growth protocol
28.5 deg C
Extracted molecule
total RNA
Extraction protocol
total RNA qiagen from dissected eye tissues
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Data processing
MAS5
Submission date
Oct 18, 2013
Last update date
Jan 01, 2014
Contact name
Deborah Lynn Stenkamp
E-mail(s)
dstenkam@uidaho.edu
Phone
208-885-8963
Organization name
University of Idaho
Department
Biological Sciences
Street address
875 Perimeter Drive, MS 3051
City
Moscow
State/province
Idaho
ZIP/Postal code
83844-3051
Country
USA
Platform ID
GPL1319
Series (1)
GSE51427
Eye-Specific Gene Expression following Embryonic Ethanol Exposure in Zebrafish: Roles for Heat Shock Factor 1
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
282.451
P
4.42873e-05
AFFX-BioB-M_at
504.589
P
4.42873e-05
AFFX-BioB-3_at
372.605
P
5.16732e-05
AFFX-BioC-5_at
790.71
P
4.42873e-05
AFFX-BioC-3_at
406.356
P
4.42873e-05
AFFX-BioDn-5_at
1000.9
P
4.42873e-05
AFFX-BioDn-3_at
2137.08
P
4.42873e-05
AFFX-CreX-5_at
3588.25
P
4.42873e-05
AFFX-CreX-3_at
5231.85
P
4.42873e-05
AFFX-DapX-5_at
3.96082
A
0.287726
AFFX-DapX-M_at
0.481587
A
0.973899
AFFX-DapX-3_at
1.13505
A
0.783476
AFFX-LysX-5_at
1.06797
A
0.455413
AFFX-LysX-M_at
2.40119
A
0.440646
AFFX-LysX-3_at
1.61849
A
0.275129
AFFX-PheX-5_at
0.83281
A
0.5
AFFX-PheX-M_at
4.47682
A
0.287743
AFFX-PheX-3_at
1.56079
A
0.672921
AFFX-ThrX-5_at
0.214935
A
0.979978
AFFX-ThrX-M_at
6.46716
A
0.185131
Total number of rows:
15617
Table truncated, full table size
576 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1245252_Bhavani-9-48hpf-E-020609.CEL.gz
2.1 Mb
(ftp)
(http)
CEL
GSM1245252_Bhavani-9-48hpf-E-020609.CHP.gz
86.3 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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