GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM124854
Query DataSets for GSM124854
Status
Public on Oct 16, 2006
Title
p53 family members in myogenic differentiation mock 0 h
Sample type
RNA
Source name
C2C12 myoblast
Organism
Mus musculus
Characteristics
mock 0 h
Extracted molecule
total RNA
Label
Biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
0h after onset of differentiation
Data processing
normalization on target 500
Submission date
Aug 03, 2006
Last update date
Jan 03, 2008
Contact name
Christof Burek
E-mail(s)
christof.burek@mail.uni-wuerzburg.de
Phone
++49 (0)931 20147696
Organization name
Universitaet Wuerzburg
Department
Pathologie
Lab
Rosenwald
Street address
Josef-schneider-Str. 2
City
Wuerzburg
ZIP/Postal code
97080
Country
Germany
Platform ID
GPL1261
Series (2)
GSE5447
p53 family members in myogenic differentiation and rhabdomyosarcoma development
GSE8660
C-terminal diversity within the p53 family accounts for differences in DNA binding and transcriptional activity
Data table header descriptions
ID_REF
VALUE
GCOS calculated intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M),
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
418.1
P
0.000581
AFFX-BioB-M_at
680.6
P
0.000044
AFFX-BioB-3_at
370.2
P
0.00006
AFFX-BioC-5_at
1263.2
P
0.000052
AFFX-BioC-3_at
1463.1
P
0.000044
AFFX-BioDn-5_at
2826.4
P
0.000044
AFFX-BioDn-3_at
4767
P
0.000044
AFFX-CreX-5_at
14177.4
P
0.000052
AFFX-CreX-3_at
18561.2
P
0.000044
AFFX-DapX-5_at
344.4
P
0.000081
AFFX-DapX-M_at
714.5
P
0.000754
AFFX-DapX-3_at
969
P
0.000095
AFFX-LysX-5_at
61.3
P
0.004484
AFFX-LysX-M_at
75
A
0.089478
AFFX-LysX-3_at
149.2
P
0.000297
AFFX-PheX-5_at
83.7
P
0.028446
AFFX-PheX-M_at
83.3
P
0.001796
AFFX-PheX-3_at
184.5
P
0.00141
AFFX-ThrX-5_at
113.6
P
0.009337
AFFX-ThrX-M_at
167.5
P
0.000581
Total number of rows:
45101
Table truncated, full table size
1211 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
