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Sample GSM1249100 Query DataSets for GSM1249100
Status Public on Mar 29, 2014
Title iPSC, clone 64, biological replicate 3
Sample type RNA
 
Source name iPSC
Organism Mus musculus
Characteristics strain: (C57BL/6x129S6)F2
gender: male
Treatment protocol No treatment
Growth protocol Cell culture conditions as described in the paper; JM8 cells have been described in PMID:19525957; IDG3.2 have been described in PMID: 17586814
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol According to the Illumina expression protocol
Scan protocol According to the Illumina expression protocol
Description Gene expression data from iPSC, biological replicate 4
Data processing Normalized (quantile) data including background subtraction (GenomeStudioV2010.1 software, gene expression module version 1.6.0)
 
Submission date Oct 23, 2013
Last update date Mar 29, 2014
Contact name Johannes Beckers
E-mail(s) johannes.beckers@helmholtz-munich.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE51605 Simple Derivation of Transgene-Free iPS Cells by a Dual Recombinase Approach

Data table header descriptions
ID_REF
VALUE Linear expression values
64#20_05.Detection Pval

Data table
ID_REF VALUE 64#20_05.Detection Pval
ILMN_2896528 1104 0.00E+00
ILMN_2721178 237 0.00E+00
ILMN_3033922 173 0.00E+00
ILMN_3092673 606 0.00E+00
ILMN_2816356 39 3.76E-03
ILMN_2808939 393 0.00E+00
ILMN_2634564 246 0.00E+00
ILMN_2737647 10 1.27E-01
ILMN_2734484 299 0.00E+00
ILMN_2952292 86 0.00E+00
ILMN_2699078 1 3.02E-01
ILMN_1213681 146 0.00E+00
ILMN_2735413 -15 8.30E-01
ILMN_2735415 -15 8.03E-01
ILMN_2891688 236 0.00E+00
ILMN_2637698 483 0.00E+00
ILMN_2674228 325 0.00E+00
ILMN_2601546 -17 8.78E-01
ILMN_1230831 -20 9.41E-01
ILMN_2848071 -11 6.39E-01

Total number of rows: 25697

Table truncated, full table size 636 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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