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Sample GSM1249103 Query DataSets for GSM1249103
Status Public on Mar 29, 2014
Title iPSC, clone 70, biological replicate 3
Sample type RNA
 
Source name iPSC
Organism Mus musculus
Characteristics strain: (C57BL/6x129S6)F2
gender: female
Treatment protocol No treatment
Growth protocol Cell culture conditions as described in the paper; JM8 cells have been described in PMID:19525957; IDG3.2 have been described in PMID: 17586814
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol According to the Illumina expression protocol
Scan protocol According to the Illumina expression protocol
Description Gene expression data from iPSC, biological replicate 6
Data processing Normalized (quantile) data including background subtraction (GenomeStudioV2010.1 software, gene expression module version 1.6.0)
 
Submission date Oct 23, 2013
Last update date Mar 29, 2014
Contact name Johannes Beckers
E-mail(s) johannes.beckers@helmholtz-munich.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE51605 Simple Derivation of Transgene-Free iPS Cells by a Dual Recombinase Approach

Data table header descriptions
ID_REF
VALUE Linear expression values
70#20_17.Detection Pval

Data table
ID_REF VALUE 70#20_17.Detection Pval
ILMN_2896528 953 0.00E+00
ILMN_2721178 146 0.00E+00
ILMN_3033922 135 0.00E+00
ILMN_3092673 701 0.00E+00
ILMN_2816356 32 0.00E+00
ILMN_2808939 298 0.00E+00
ILMN_2634564 285 0.00E+00
ILMN_2737647 -2 2.97E-01
ILMN_2734484 393 0.00E+00
ILMN_2952292 73 0.00E+00
ILMN_2699078 -7 5.08E-01
ILMN_1213681 94 0.00E+00
ILMN_2735413 2 1.90E-01
ILMN_2735415 -18 8.97E-01
ILMN_2891688 368 0.00E+00
ILMN_2637698 500 0.00E+00
ILMN_2674228 178 0.00E+00
ILMN_2601546 0 2.44E-01
ILMN_1230831 -9 5.76E-01
ILMN_2848071 19 8.77E-03

Total number of rows: 25697

Table truncated, full table size 636 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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