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Sample GSM1249105 Query DataSets for GSM1249105
Status Public on Mar 29, 2014
Title iPSC, clone 78, biological replicate 2
Sample type RNA
 
Source name iPSC
Organism Mus musculus
Characteristics strain: (C57BL/6x129S6)F2
gender: male
Treatment protocol No treatment
Growth protocol Cell culture conditions as described in the paper; JM8 cells have been described in PMID:19525957; IDG3.2 have been described in PMID: 17586814
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol According to the Illumina expression protocol
Scan protocol According to the Illumina expression protocol
Description Gene expression data from iPSC, biological replicate 10
Data processing Normalized (quantile) data including background subtraction (GenomeStudioV2010.1 software, gene expression module version 1.6.0)
 
Submission date Oct 23, 2013
Last update date Mar 29, 2014
Contact name Johannes Beckers
E-mail(s) johannes.beckers@helmholtz-munich.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE51605 Simple Derivation of Transgene-Free iPS Cells by a Dual Recombinase Approach

Data table header descriptions
ID_REF
VALUE Linear expression values
78#20_05.Detection Pval

Data table
ID_REF VALUE 78#20_05.Detection Pval
ILMN_2896528 582 0.00E+00
ILMN_2721178 58 5.14E-02
ILMN_3033922 81 2.76E-02
ILMN_3092673 568 0.00E+00
ILMN_2816356 58 5.14E-02
ILMN_2808939 297 1.25E-03
ILMN_2634564 264 2.51E-03
ILMN_2737647 0 3.95E-01
ILMN_2734484 499 0.00E+00
ILMN_2952292 27 1.18E-01
ILMN_2699078 -16 8.58E-01
ILMN_1213681 85 2.76E-02
ILMN_2735413 10 2.39E-01
ILMN_2735415 -4 5.01E-01
ILMN_2891688 133 1.25E-02
ILMN_2637698 271 1.25E-03
ILMN_2674228 605 0.00E+00
ILMN_2601546 11 2.28E-01
ILMN_1230831 48 6.02E-02
ILMN_2848071 407 0.00E+00

Total number of rows: 25697

Table truncated, full table size 636 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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