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Sample GSM1249364 Query DataSets for GSM1249364
Status Public on Nov 01, 2013
Title Colon tissue: SIV infected, antiretroviral therapy treated macaque biological rep 3
Sample type RNA
Source name SIV infected, antiretroviral therapy treated macaque colon tissue
Organism Macaca mulatta
Characteristics tissue: colonic mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, antiretroviral therapy treated macaque colon tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 28.417
AY588945.CDS2.S1_s_at 8.571
AY588945.CDS3.S1_s_at 19.019
AY588945.CDS4.S1_s_at 4.150
AY588945.CDS6.S1_at 19.970
AY588945.CDS6.S1_s_at 8.739
AY588945.CDS7.S1_s_at 6.355
AY588945.CDS8.S1_at 10.961
AY588945.CDS9.S1_s_at 7.075
Mmu.10002.1.S1_at 1149.609
Mmu.10002.1.S1_s_at 3198.922
Mmu.10014.1.S1_at 3694.574
Mmu.10025.1.S1_at 1732.700
Mmu.10030.1.S1_at 13360.772
Mmu.10039.1.S1_at 577.586
Mmu.10045.2.S1_at 2138.254
Mmu.10045.2.S1_x_at 4262.165
Mmu.10062.1.S1_s_at 20478.224
Mmu.10083.1.A1_at 233.879
Mmu.10083.1.S1_s_at 473.358

Total number of rows: 52766

Table truncated, full table size 1491 Kbytes.

Supplementary file Size Download File type/resource
GSM1249364_COL_AT_34540.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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