GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1249365 Query DataSets for GSM1249365
Status Public on Nov 01, 2013
Title Colon tissue: SIV infected, untreated macaque biological rep 1
Sample type RNA
Source name SIV infected, untreated macaque colon tissue
Organism Macaca mulatta
Characteristics tissue: colonic mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque colon tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 25.143
AY588945.CDS2.S1_s_at 8.093
AY588945.CDS3.S1_s_at 22.131
AY588945.CDS4.S1_s_at 4.752
AY588945.CDS6.S1_at 28.354
AY588945.CDS6.S1_s_at 11.800
AY588945.CDS7.S1_s_at 10.982
AY588945.CDS8.S1_at 10.864
AY588945.CDS9.S1_s_at 9.379
Mmu.10002.1.S1_at 2357.724
Mmu.10002.1.S1_s_at 4120.629
Mmu.10014.1.S1_at 3704.997
Mmu.10025.1.S1_at 1173.934
Mmu.10030.1.S1_at 13638.303
Mmu.10039.1.S1_at 524.534
Mmu.10045.2.S1_at 187.335
Mmu.10045.2.S1_x_at 207.369
Mmu.10062.1.S1_s_at 24227.311
Mmu.10083.1.A1_at 221.613
Mmu.10083.1.S1_s_at 735.380

Total number of rows: 52766

Table truncated, full table size 1491 Kbytes.

Supplementary file Size Download File type/resource
GSM1249365_COL_NT_29943.CEL.gz 4.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap