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Sample GSM1249366 Query DataSets for GSM1249366
Status Public on Nov 01, 2013
Title Colon tissue: SIV infected, untreated macaque biological rep 2
Sample type RNA
Source name SIV infected, untreated macaque colon tissue
Organism Macaca mulatta
Characteristics tissue: colonic mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque colon tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 32.130
AY588945.CDS2.S1_s_at 6.172
AY588945.CDS3.S1_s_at 19.523
AY588945.CDS4.S1_s_at 4.764
AY588945.CDS6.S1_at 24.795
AY588945.CDS6.S1_s_at 10.556
AY588945.CDS7.S1_s_at 9.856
AY588945.CDS8.S1_at 17.875
AY588945.CDS9.S1_s_at 9.464
Mmu.10002.1.S1_at 2040.072
Mmu.10002.1.S1_s_at 9741.447
Mmu.10014.1.S1_at 2927.685
Mmu.10025.1.S1_at 1183.345
Mmu.10030.1.S1_at 7619.035
Mmu.10039.1.S1_at 384.592
Mmu.10045.2.S1_at 949.201
Mmu.10045.2.S1_x_at 1032.039
Mmu.10062.1.S1_s_at 20550.689
Mmu.10083.1.A1_at 229.259
Mmu.10083.1.S1_s_at 288.838

Total number of rows: 52766

Table truncated, full table size 1492 Kbytes.

Supplementary file Size Download File type/resource
GSM1249366_COL_NT_30085.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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