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Sample GSM1249367 Query DataSets for GSM1249367
Status Public on Nov 01, 2013
Title Colon tissue: SIV infected, untreated macaque biological rep 3
Sample type RNA
 
Source name SIV infected, untreated macaque colon tissue
Organism Macaca mulatta
Characteristics tissue: colonic mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque colon tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 44.020
AY588945.CDS2.S1_s_at 10.289
AY588945.CDS3.S1_s_at 39.519
AY588945.CDS4.S1_s_at 5.138
AY588945.CDS6.S1_at 18.902
AY588945.CDS6.S1_s_at 12.400
AY588945.CDS7.S1_s_at 15.624
AY588945.CDS8.S1_at 19.942
AY588945.CDS9.S1_s_at 42.157
Mmu.10002.1.S1_at 2574.473
Mmu.10002.1.S1_s_at 10335.241
Mmu.10014.1.S1_at 2568.585
Mmu.10025.1.S1_at 1300.079
Mmu.10030.1.S1_at 9426.269
Mmu.10039.1.S1_at 418.205
Mmu.10045.2.S1_at 616.675
Mmu.10045.2.S1_x_at 1601.185
Mmu.10062.1.S1_s_at 29230.182
Mmu.10083.1.A1_at 170.792
Mmu.10083.1.S1_s_at 610.886

Total number of rows: 52766

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM1249367_COL_NT_30266.CEL.gz 3.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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