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Sample GSM1249368 Query DataSets for GSM1249368
Status Public on Nov 01, 2013
Title Colon tissue: SIV infected, untreated macaque biological rep 4
Sample type RNA
Source name SIV infected, untreated macaque colon tissue
Organism Macaca mulatta
Characteristics tissue: colonic mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque colon tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 29.238
AY588945.CDS2.S1_s_at 6.177
AY588945.CDS3.S1_s_at 19.407
AY588945.CDS4.S1_s_at 4.918
AY588945.CDS6.S1_at 20.919
AY588945.CDS6.S1_s_at 7.910
AY588945.CDS7.S1_s_at 6.182
AY588945.CDS8.S1_at 11.404
AY588945.CDS9.S1_s_at 7.919
Mmu.10002.1.S1_at 3723.693
Mmu.10002.1.S1_s_at 10048.738
Mmu.10014.1.S1_at 2950.880
Mmu.10025.1.S1_at 560.151
Mmu.10030.1.S1_at 12881.712
Mmu.10039.1.S1_at 474.243
Mmu.10045.2.S1_at 107.495
Mmu.10045.2.S1_x_at 94.915
Mmu.10062.1.S1_s_at 32391.169
Mmu.10083.1.A1_at 240.214
Mmu.10083.1.S1_s_at 100.899

Total number of rows: 52766

Table truncated, full table size 1491 Kbytes.

Supplementary file Size Download File type/resource
GSM1249368_COL_NT_31353.CEL.gz 4.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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