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Sample GSM1249369 Query DataSets for GSM1249369
Status Public on Nov 01, 2013
Title Colon tissue: healthy uninfected macaque biological rep 1
Sample type RNA
 
Source name Healthy uninfected macaque colon tissue
Organism Macaca mulatta
Characteristics tissue: colonic mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from healthy macaque colon tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 44.042
AY588945.CDS2.S1_s_at 9.295
AY588945.CDS3.S1_s_at 26.716
AY588945.CDS4.S1_s_at 7.016
AY588945.CDS6.S1_at 21.720
AY588945.CDS6.S1_s_at 10.434
AY588945.CDS7.S1_s_at 6.920
AY588945.CDS8.S1_at 10.307
AY588945.CDS9.S1_s_at 7.262
Mmu.10002.1.S1_at 2659.912
Mmu.10002.1.S1_s_at 7721.052
Mmu.10014.1.S1_at 3569.516
Mmu.10025.1.S1_at 1282.004
Mmu.10030.1.S1_at 9850.478
Mmu.10039.1.S1_at 435.604
Mmu.10045.2.S1_at 135.935
Mmu.10045.2.S1_x_at 194.669
Mmu.10062.1.S1_s_at 36593.174
Mmu.10083.1.A1_at 205.863
Mmu.10083.1.S1_s_at 298.841

Total number of rows: 52766

Table truncated, full table size 1491 Kbytes.




Supplementary file Size Download File type/resource
GSM1249369_COL_UI_30327.CEL.gz 4.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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