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Sample GSM1249370 Query DataSets for GSM1249370
Status Public on Nov 01, 2013
Title Colon tissue: healthy uninfected macaque biological rep 2
Sample type RNA
Source name Healthy uninfected macaque colon tissue
Organism Macaca mulatta
Characteristics tissue: colonic mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from healthy macaque colon tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 43.52945078
AY588945.CDS2.S1_s_at 11.42947577
AY588945.CDS3.S1_s_at 24.21098463
AY588945.CDS4.S1_s_at 4.939015705
AY588945.CDS6.S1_at 13.28757548
AY588945.CDS6.S1_s_at 9.843807572
AY588945.CDS7.S1_s_at 6.441276201
AY588945.CDS8.S1_at 12.48123043
AY588945.CDS9.S1_s_at 5.061102857
Mmu.10002.1.S1_at 2190.08721
Mmu.10002.1.S1_s_at 9635.037825
Mmu.10014.1.S1_at 3030.122648
Mmu.10025.1.S1_at 1609.196211
Mmu.10030.1.S1_at 7997.315717
Mmu.10039.1.S1_at 526.459202
Mmu.10045.2.S1_at 65.82801938
Mmu.10045.2.S1_x_at 80.11169896
Mmu.10062.1.S1_s_at 21493.4587
Mmu.10083.1.A1_at 290.1194847
Mmu.10083.1.S1_s_at 8949.285671

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.

Supplementary file Size Download File type/resource
GSM1249370_COL_UI_33675.CEL.gz 4.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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