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Sample GSM1249372 Query DataSets for GSM1249372
Status Public on Nov 01, 2013
Title Jejunum tissue: SIV infected, antiretroviral therapy treated macaque biological rep 1
Sample type RNA
 
Source name SIV infected, antiretroviral therapy treated macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, antiretroviral therapy treated macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 31.74071104
AY588945.CDS2.S1_s_at 6.765350652
AY588945.CDS3.S1_s_at 17.06205651
AY588945.CDS4.S1_s_at 4.791921533
AY588945.CDS6.S1_at 24.8625806
AY588945.CDS6.S1_s_at 9.376301658
AY588945.CDS7.S1_s_at 6.700178582
AY588945.CDS8.S1_at 11.99221796
AY588945.CDS9.S1_s_at 6.240028263
Mmu.10002.1.S1_at 1278.876284
Mmu.10002.1.S1_s_at 2957.661264
Mmu.10014.1.S1_at 4306.003224
Mmu.10025.1.S1_at 3630.509574
Mmu.10030.1.S1_at 11254.06342
Mmu.10039.1.S1_at 540.1027995
Mmu.10045.2.S1_at 102.6399278
Mmu.10045.2.S1_x_at 250.7343558
Mmu.10062.1.S1_s_at 24531.88449
Mmu.10083.1.A1_at 190.5391005
Mmu.10083.1.S1_s_at 1121.357714

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249372_JEJ_AT_30378.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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