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Sample GSM1249373 Query DataSets for GSM1249373
Status Public on Nov 01, 2013
Title Jejunum tissue: SIV infected, antiretroviral therapy treated macaque biological rep 2
Sample type RNA
 
Source name SIV infected, antiretroviral therapy treated macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, antiretroviral therapy treated macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 38.55271992
AY588945.CDS2.S1_s_at 7.438479219
AY588945.CDS3.S1_s_at 29.3445057
AY588945.CDS4.S1_s_at 5.987838819
AY588945.CDS6.S1_at 17.21475359
AY588945.CDS6.S1_s_at 11.00155601
AY588945.CDS7.S1_s_at 7.152812911
AY588945.CDS8.S1_at 10.68714568
AY588945.CDS9.S1_s_at 9.288835279
Mmu.10002.1.S1_at 1559.5392
Mmu.10002.1.S1_s_at 7921.039734
Mmu.10014.1.S1_at 2261.14395
Mmu.10025.1.S1_at 1623.185914
Mmu.10030.1.S1_at 8173.977089
Mmu.10039.1.S1_at 517.0360899
Mmu.10045.2.S1_at 1079.109033
Mmu.10045.2.S1_x_at 1842.248443
Mmu.10062.1.S1_s_at 19079.6864
Mmu.10083.1.A1_at 201.5898753
Mmu.10083.1.S1_s_at 191.9906679

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249373_JEJ_AT_33162.CEL.gz 3.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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