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Sample GSM1249374 Query DataSets for GSM1249374
Status Public on Nov 01, 2013
Title Jejunum tissue: SIV infected, antiretroviral therapy treated macaque biological rep 3
Sample type RNA
Source name SIV infected, antiretroviral therapy treated macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, antiretroviral therapy treated macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 31.84787434
AY588945.CDS2.S1_s_at 7.790823506
AY588945.CDS3.S1_s_at 20.07381266
AY588945.CDS4.S1_s_at 5.52713232
AY588945.CDS6.S1_at 15.38942348
AY588945.CDS6.S1_s_at 7.626913231
AY588945.CDS7.S1_s_at 5.097893083
AY588945.CDS8.S1_at 10.05432799
AY588945.CDS9.S1_s_at 7.036853654
Mmu.10002.1.S1_at 1392.530359
Mmu.10002.1.S1_s_at 3517.434928
Mmu.10014.1.S1_at 2679.345194
Mmu.10025.1.S1_at 4980.058641
Mmu.10030.1.S1_at 9793.648719
Mmu.10039.1.S1_at 644.6180497
Mmu.10045.2.S1_at 1421.035976
Mmu.10045.2.S1_x_at 1872.989684
Mmu.10062.1.S1_s_at 31467.64652
Mmu.10083.1.A1_at 180.6651395
Mmu.10083.1.S1_s_at 334.5741675

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.

Supplementary file Size Download File type/resource
GSM1249374_JEJ_AT_34540.CEL.gz 4.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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