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Sample GSM1249375 Query DataSets for GSM1249375
Status Public on Nov 01, 2013
Title Jejunum tissue: SIV infected, untreated macaque biological rep 1
Sample type RNA
 
Source name SIV infected, untreated macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 30.1977031
AY588945.CDS2.S1_s_at 8.049624224
AY588945.CDS3.S1_s_at 21.77431175
AY588945.CDS4.S1_s_at 4.550849249
AY588945.CDS6.S1_at 36.52587056
AY588945.CDS6.S1_s_at 9.127101364
AY588945.CDS7.S1_s_at 7.204158936
AY588945.CDS8.S1_at 12.0404172
AY588945.CDS9.S1_s_at 5.519996588
Mmu.10002.1.S1_at 883.6056688
Mmu.10002.1.S1_s_at 1708.969701
Mmu.10014.1.S1_at 2786.125999
Mmu.10025.1.S1_at 2876.301591
Mmu.10030.1.S1_at 9719.537837
Mmu.10039.1.S1_at 471.6913553
Mmu.10045.2.S1_at 272.6850252
Mmu.10045.2.S1_x_at 543.628664
Mmu.10062.1.S1_s_at 41386.68197
Mmu.10083.1.A1_at 277.5884555
Mmu.10083.1.S1_s_at 128.0525638

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249375_JEJ_NT_29943.CEL.gz 4.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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