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Sample GSM1249376 Query DataSets for GSM1249376
Status Public on Nov 01, 2013
Title Jejunum tissue: SIV infected, untreated macaque biological rep 2
Sample type RNA
Source name SIV infected, untreated macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Feb 26, 2014
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung
Reanalyzed by GSM1334680

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 43.40876391
AY588945.CDS2.S1_s_at 8.656016458
AY588945.CDS3.S1_s_at 20.30869323
AY588945.CDS4.S1_s_at 5.253081764
AY588945.CDS6.S1_at 29.53813399
AY588945.CDS6.S1_s_at 7.421806018
AY588945.CDS7.S1_s_at 6.914710437
AY588945.CDS8.S1_at 15.581413
AY588945.CDS9.S1_s_at 6.803906412
Mmu.10002.1.S1_at 678.6417954
Mmu.10002.1.S1_s_at 1597.934646
Mmu.10014.1.S1_at 3323.270166
Mmu.10025.1.S1_at 3789.875556
Mmu.10030.1.S1_at 3972.861662
Mmu.10039.1.S1_at 489.8645823
Mmu.10045.2.S1_at 588.9437673
Mmu.10045.2.S1_x_at 763.1921411
Mmu.10062.1.S1_s_at 32857.63894
Mmu.10083.1.A1_at 246.7374024
Mmu.10083.1.S1_s_at 121.3841956

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.

Supplementary file Size Download File type/resource
GSM1249376_JEJ_NT_30085.CEL.gz 4.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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