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Sample GSM1249377 Query DataSets for GSM1249377
Status Public on Nov 01, 2013
Title Jejunum tissue: SIV infected, untreated macaque biological rep 3
Sample type RNA
 
Source name SIV infected, untreated macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 252.2092581
AY588945.CDS2.S1_s_at 12.72039603
AY588945.CDS3.S1_s_at 57.54633044
AY588945.CDS4.S1_s_at 4.782875333
AY588945.CDS6.S1_at 137.2775378
AY588945.CDS6.S1_s_at 50.19888106
AY588945.CDS7.S1_s_at 27.7177825
AY588945.CDS8.S1_at 67.50692637
AY588945.CDS9.S1_s_at 15.04481037
Mmu.10002.1.S1_at 48.65646552
Mmu.10002.1.S1_s_at 171.842164
Mmu.10014.1.S1_at 28.80311117
Mmu.10025.1.S1_at 161.0587153
Mmu.10030.1.S1_at 48.30283633
Mmu.10039.1.S1_at 32.2616
Mmu.10045.2.S1_at 160.6342711
Mmu.10045.2.S1_x_at 132.1997532
Mmu.10062.1.S1_s_at 136.4073459
Mmu.10083.1.A1_at 1443.925514
Mmu.10083.1.S1_s_at 676.9805197

Total number of rows: 52766

Table truncated, full table size 1721 Kbytes.




Supplementary file Size Download File type/resource
GSM1249377_JEJ_NT_30266.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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