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Sample GSM1249378 Query DataSets for GSM1249378
Status Public on Nov 01, 2013
Title Jejunum tissue: SIV infected, untreated macaque biological rep 4
Sample type RNA
 
Source name SIV infected, untreated macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 62.50185329
AY588945.CDS2.S1_s_at 24.73398091
AY588945.CDS3.S1_s_at 22.33857793
AY588945.CDS4.S1_s_at 5.773977047
AY588945.CDS6.S1_at 93.52122889
AY588945.CDS6.S1_s_at 13.59439433
AY588945.CDS7.S1_s_at 296.0461985
AY588945.CDS8.S1_at 659.3480005
AY588945.CDS9.S1_s_at 2106.456462
Mmu.10002.1.S1_at 609.248191
Mmu.10002.1.S1_s_at 2429.982938
Mmu.10014.1.S1_at 2538.862285
Mmu.10025.1.S1_at 2740.200211
Mmu.10030.1.S1_at 5039.184884
Mmu.10039.1.S1_at 437.6051186
Mmu.10045.2.S1_at 537.1599404
Mmu.10045.2.S1_x_at 386.3120601
Mmu.10062.1.S1_s_at 35551.57501
Mmu.10083.1.A1_at 242.7016068
Mmu.10083.1.S1_s_at 584.7708797

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249378_JEJ_NT_31353.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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