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Sample GSM1249379 Query DataSets for GSM1249379
Status Public on Nov 01, 2013
Title Jejunum tissue: SIV infected, untreated macaque biological rep 5
Sample type RNA
 
Source name SIV infected, untreated macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 40.21560537
AY588945.CDS2.S1_s_at 7.340372616
AY588945.CDS3.S1_s_at 22.19976453
AY588945.CDS4.S1_s_at 4.563647509
AY588945.CDS6.S1_at 29.93028802
AY588945.CDS6.S1_s_at 8.59113492
AY588945.CDS7.S1_s_at 10.40525188
AY588945.CDS8.S1_at 17.92477329
AY588945.CDS9.S1_s_at 12.4405172
Mmu.10002.1.S1_at 1950.905399
Mmu.10002.1.S1_s_at 3169.41159
Mmu.10014.1.S1_at 2842.272535
Mmu.10025.1.S1_at 4947.273011
Mmu.10030.1.S1_at 8879.946641
Mmu.10039.1.S1_at 433.9214725
Mmu.10045.2.S1_at 326.5106735
Mmu.10045.2.S1_x_at 314.7879515
Mmu.10062.1.S1_s_at 43496.35061
Mmu.10083.1.A1_at 258.178902
Mmu.10083.1.S1_s_at 128.0970844

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249379_JEJ_NT_34030.CEL.gz 4.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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