GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1249380 Query DataSets for GSM1249380
Status Public on Nov 01, 2013
Title Jejunum tissue: healthy uninfected macaque biological rep 1
Sample type RNA
Source name Healthy uninfected macaque jejunum tissue
Organism Macaca mulatta
Characteristics tissue: jejunal mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from healthy macaque jejunum tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 41.12851786
AY588945.CDS2.S1_s_at 43.32125444
AY588945.CDS3.S1_s_at 18.39055286
AY588945.CDS4.S1_s_at 7.652749046
AY588945.CDS6.S1_at 32.13859762
AY588945.CDS6.S1_s_at 8.59113492
AY588945.CDS7.S1_s_at 8.305722955
AY588945.CDS8.S1_at 10.21140916
AY588945.CDS9.S1_s_at 7.315198089
Mmu.10002.1.S1_at 1890.984238
Mmu.10002.1.S1_s_at 4044.151361
Mmu.10014.1.S1_at 2550.70916
Mmu.10025.1.S1_at 5113.29566
Mmu.10030.1.S1_at 8073.910398
Mmu.10039.1.S1_at 495.1894017
Mmu.10045.2.S1_at 328.9482175
Mmu.10045.2.S1_x_at 473.6305419
Mmu.10062.1.S1_s_at 42207.46913
Mmu.10083.1.A1_at 218.6150482
Mmu.10083.1.S1_s_at 79.00296459

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.

Supplementary file Size Download File type/resource
GSM1249380_JEJ_UI_30292.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap