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Sample GSM1249383 Query DataSets for GSM1249383
Status Public on Nov 01, 2013
Title Lung tissue: SIV infected, antiretroviral therapy treated macaque biological rep 1
Sample type RNA
 
Source name SIV infected, antiretroviral therapy treated macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, antiretroviral therapy treated macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 28.30040728
AY588945.CDS2.S1_s_at 6.928967331
AY588945.CDS3.S1_s_at 26.70083055
AY588945.CDS4.S1_s_at 5.300789962
AY588945.CDS6.S1_at 26.97948728
AY588945.CDS6.S1_s_at 10.96623153
AY588945.CDS7.S1_s_at 5.146484651
AY588945.CDS8.S1_at 12.19843865
AY588945.CDS9.S1_s_at 6.534483547
Mmu.10002.1.S1_at 1362.123575
Mmu.10002.1.S1_s_at 4481.131769
Mmu.10014.1.S1_at 4266.353609
Mmu.10025.1.S1_at 9351.307445
Mmu.10030.1.S1_at 9132.332836
Mmu.10039.1.S1_at 590.1055832
Mmu.10045.2.S1_at 231.3477623
Mmu.10045.2.S1_x_at 169.6619044
Mmu.10062.1.S1_s_at 3874.658285
Mmu.10083.1.A1_at 183.4928764
Mmu.10083.1.S1_s_at 668.0270907

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249383_LNG_AT_30378.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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