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Sample GSM1249384 Query DataSets for GSM1249384
Status Public on Nov 01, 2013
Title Lung tissue: SIV infected, antiretroviral therapy treated macaque biological rep 2
Sample type RNA
 
Source name SIV infected, antiretroviral therapy treated macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, antiretroviral therapy treated macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 22.85900607
AY588945.CDS2.S1_s_at 6.749813697
AY588945.CDS3.S1_s_at 20.95338034
AY588945.CDS4.S1_s_at 3.935832071
AY588945.CDS6.S1_at 14.72796824
AY588945.CDS6.S1_s_at 7.017195675
AY588945.CDS7.S1_s_at 4.897071395
AY588945.CDS8.S1_at 9.068112399
AY588945.CDS9.S1_s_at 5.660689928
Mmu.10002.1.S1_at 1561.540892
Mmu.10002.1.S1_s_at 4754.153742
Mmu.10014.1.S1_at 3354.030428
Mmu.10025.1.S1_at 5738.29678
Mmu.10030.1.S1_at 10939.76346
Mmu.10039.1.S1_at 745.7357387
Mmu.10045.2.S1_at 1298.08624
Mmu.10045.2.S1_x_at 2465.301918
Mmu.10062.1.S1_s_at 9678.644646
Mmu.10083.1.A1_at 115.9313117
Mmu.10083.1.S1_s_at 1645.957211

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249384_LNG_AT_33162.CEL.gz 4.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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