NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1249386 Query DataSets for GSM1249386
Status Public on Nov 01, 2013
Title Lung tissue: SIV infected, untreated macaque biological rep 1
Sample type RNA
 
Source name SIV infected, untreated macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 18.93088032
AY588945.CDS2.S1_s_at 9.859617552
AY588945.CDS3.S1_s_at 20.61000965
AY588945.CDS4.S1_s_at 5.172742096
AY588945.CDS6.S1_at 33.20184472
AY588945.CDS6.S1_s_at 8.552201507
AY588945.CDS7.S1_s_at 5.852327147
AY588945.CDS8.S1_at 8.306726997
AY588945.CDS9.S1_s_at 5.948403696
Mmu.10002.1.S1_at 1755.472476
Mmu.10002.1.S1_s_at 2253.2234
Mmu.10014.1.S1_at 5710.36783
Mmu.10025.1.S1_at 1814.746759
Mmu.10030.1.S1_at 26043.12454
Mmu.10039.1.S1_at 930.9508062
Mmu.10045.2.S1_at 180.1563788
Mmu.10045.2.S1_x_at 271.239596
Mmu.10062.1.S1_s_at 11073.44801
Mmu.10083.1.A1_at 192.5040233
Mmu.10083.1.S1_s_at 145.6586026

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249386_LNG_NT_29943.CEL.gz 4.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap