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Sample GSM1249388 Query DataSets for GSM1249388
Status Public on Nov 01, 2013
Title Lung tissue: SIV infected, untreated macaque biological rep 3
Sample type RNA
Source name SIV infected, untreated macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 23.24941686
AY588945.CDS2.S1_s_at 6.138674334
AY588945.CDS3.S1_s_at 26.99574045
AY588945.CDS4.S1_s_at 4.811530567
AY588945.CDS6.S1_at 21.86744161
AY588945.CDS6.S1_s_at 9.672014037
AY588945.CDS7.S1_s_at 6.226733136
AY588945.CDS8.S1_at 12.44461102
AY588945.CDS9.S1_s_at 8.484290331
Mmu.10002.1.S1_at 718.5122608
Mmu.10002.1.S1_s_at 3004.532767
Mmu.10014.1.S1_at 618.042695
Mmu.10025.1.S1_at 2395.432652
Mmu.10030.1.S1_at 14019.64603
Mmu.10039.1.S1_at 125.1497085
Mmu.10045.2.S1_at 1329.08366
Mmu.10045.2.S1_x_at 1747.044181
Mmu.10062.1.S1_s_at 11380.33932
Mmu.10083.1.A1_at 192.6752017
Mmu.10083.1.S1_s_at 339.7760241

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.

Supplementary file Size Download File type/resource
GSM1249388_LNG_NT_30266.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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