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Sample GSM1249389 Query DataSets for GSM1249389
Status Public on Nov 01, 2013
Title Lung tissue: SIV infected, untreated macaque biological rep 4
Sample type RNA
 
Source name SIV infected, untreated macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 58.99044089
AY588945.CDS2.S1_s_at 54.12833512
AY588945.CDS3.S1_s_at 52.09745913
AY588945.CDS4.S1_s_at 13.80592367
AY588945.CDS6.S1_at 1256.878311
AY588945.CDS6.S1_s_at 14.7540777
AY588945.CDS7.S1_s_at 1297.243469
AY588945.CDS8.S1_at 1756.994099
AY588945.CDS9.S1_s_at 5350.961318
Mmu.10002.1.S1_at 1513.413615
Mmu.10002.1.S1_s_at 4647.107417
Mmu.10014.1.S1_at 4386.758556
Mmu.10025.1.S1_at 69473.37098
Mmu.10030.1.S1_at 20256.29047
Mmu.10039.1.S1_at 657.966711
Mmu.10045.2.S1_at 350.9808283
Mmu.10045.2.S1_x_at 472.4026381
Mmu.10062.1.S1_s_at 15420.61105
Mmu.10083.1.A1_at 391.3140972
Mmu.10083.1.S1_s_at 195587.76

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249389_LNG_NT_31353.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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