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Sample GSM1249390 Query DataSets for GSM1249390
Status Public on Nov 01, 2013
Title Lung tissue: SIV infected, untreated macaque biological rep 5
Sample type RNA
 
Source name SIV infected, untreated macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from SIV infected, untreated macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 25.65414611
AY588945.CDS2.S1_s_at 7.510606154
AY588945.CDS3.S1_s_at 16.00105301
AY588945.CDS4.S1_s_at 4.00959211
AY588945.CDS6.S1_at 36.24037974
AY588945.CDS6.S1_s_at 10.00633234
AY588945.CDS7.S1_s_at 8.59764274
AY588945.CDS8.S1_at 13.04778072
AY588945.CDS9.S1_s_at 13.52787729
Mmu.10002.1.S1_at 1596.387104
Mmu.10002.1.S1_s_at 1841.217428
Mmu.10014.1.S1_at 3372.45712
Mmu.10025.1.S1_at 33289.08512
Mmu.10030.1.S1_at 41699.50882
Mmu.10039.1.S1_at 719.5418656
Mmu.10045.2.S1_at 610.4232825
Mmu.10045.2.S1_x_at 689.8493733
Mmu.10062.1.S1_s_at 13241.8368
Mmu.10083.1.A1_at 312.4458015
Mmu.10083.1.S1_s_at 7022.954769

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249390_LNG_NT_34030.CEL.gz 4.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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