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Sample GSM1249391 Query DataSets for GSM1249391
Status Public on Nov 01, 2013
Title Lung tissue: healthy uninfected macaque biological rep 1
Sample type RNA
Source name Healthy uninfected macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from healthy macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 19.69727758
AY588945.CDS2.S1_s_at 12.89429067
AY588945.CDS3.S1_s_at 22.8392801
AY588945.CDS4.S1_s_at 5.315471045
AY588945.CDS6.S1_at 21.74493269
AY588945.CDS6.S1_s_at 8.291153272
AY588945.CDS7.S1_s_at 6.317621428
AY588945.CDS8.S1_at 9.261063329
AY588945.CDS9.S1_s_at 11.7006714
Mmu.10002.1.S1_at 512.9721219
Mmu.10002.1.S1_s_at 1390.868006
Mmu.10014.1.S1_at 3722.503692
Mmu.10025.1.S1_at 15897.50997
Mmu.10030.1.S1_at 11226.88886
Mmu.10039.1.S1_at 524.4222359
Mmu.10045.2.S1_at 164.2564598
Mmu.10045.2.S1_x_at 236.7857996
Mmu.10062.1.S1_s_at 7578.663299
Mmu.10083.1.A1_at 132.6409325
Mmu.10083.1.S1_s_at 833.9519486

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.

Supplementary file Size Download File type/resource
GSM1249391_LNG_UI_30327.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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