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Sample GSM1249392 Query DataSets for GSM1249392
Status Public on Nov 01, 2013
Title Lung tissue: healthy uninfected macaque biological rep 2
Sample type RNA
 
Source name Healthy uninfected macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from healthy macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
 
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
E-mail(s) mdgeorge@ucdavis.edu
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
ID_REF
VALUE GeneSpring signal intensity

Data table
ID_REF VALUE
AY588945.CDS1.S1_s_at 34.76989169
AY588945.CDS2.S1_s_at 6.189344884
AY588945.CDS3.S1_s_at 24.20689815
AY588945.CDS4.S1_s_at 5.45595789
AY588945.CDS6.S1_at 19.2077927
AY588945.CDS6.S1_s_at 6.974323618
AY588945.CDS7.S1_s_at 4.431605359
AY588945.CDS8.S1_at 11.74687263
AY588945.CDS9.S1_s_at 4.944428937
Mmu.10002.1.S1_at 2808.50813
Mmu.10002.1.S1_s_at 8970.28858
Mmu.10014.1.S1_at 3647.987774
Mmu.10025.1.S1_at 21223.18759
Mmu.10030.1.S1_at 14338.52735
Mmu.10039.1.S1_at 632.1822621
Mmu.10045.2.S1_at 334.1948433
Mmu.10045.2.S1_x_at 288.3717291
Mmu.10062.1.S1_s_at 6448.923097
Mmu.10083.1.A1_at 218.2348893
Mmu.10083.1.S1_s_at 13981.60609

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.




Supplementary file Size Download File type/resource
GSM1249392_LNG_UI_33675.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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