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Sample GSM1249393 Query DataSets for GSM1249393
Status Public on Nov 01, 2013
Title Lung tissue: healthy uninfected macaque biological rep 3
Sample type RNA
Source name Healthy uninfected macaque lung tissue
Organism Macaca mulatta
Characteristics tissue: lung mucosa
age: 4-6 years
Treatment protocol One SIV infected macaque (30378) was administered antiretroviral therapy beginning at 6 weeks post-infection, and two SIV infected macaques (33162 and 34540) were administered antiretroviral therapy beginning at 10 weeks post-infection
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol RNA was extracted with the Qiagen Rneasy kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard protocols described in the Affymetrix Gene Expression Analysis Technical Manual
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus macaque 3' IVT arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from healthy macaque lung tissue
Data processing The data were analyzed with GeneSpring software, version 9
Submission date Oct 23, 2013
Last update date Nov 01, 2013
Contact name Michael George
Organization name University of California, Davis
Department Medical Microbiology and Immunology
Street address 451 Health Sciences Drive
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL3535
Series (1)
GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

Data table header descriptions
VALUE GeneSpring signal intensity

Data table
AY588945.CDS1.S1_s_at 17.00284122
AY588945.CDS2.S1_s_at 8.037494559
AY588945.CDS3.S1_s_at 22.90615363
AY588945.CDS4.S1_s_at 4.881448825
AY588945.CDS6.S1_at 22.54151209
AY588945.CDS6.S1_s_at 6.364417997
AY588945.CDS7.S1_s_at 4.519636426
AY588945.CDS8.S1_at 10.64395264
AY588945.CDS9.S1_s_at 5.583665242
Mmu.10002.1.S1_at 3723.068193
Mmu.10002.1.S1_s_at 10961.63193
Mmu.10014.1.S1_at 1550.376244
Mmu.10025.1.S1_at 16003.58024
Mmu.10030.1.S1_at 17131.89622
Mmu.10039.1.S1_at 202.879663
Mmu.10045.2.S1_at 235.1995815
Mmu.10045.2.S1_x_at 218.5743969
Mmu.10062.1.S1_s_at 8282.950599
Mmu.10083.1.A1_at 156.1939999
Mmu.10083.1.S1_s_at 670.5179288

Total number of rows: 52766

Table truncated, full table size 1722 Kbytes.

Supplementary file Size Download File type/resource
GSM1249393_LNG_UI_34249.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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