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Sample GSM1250025 Query DataSets for GSM1250025
Status Public on Sep 02, 2014
Title E15.5_Lung_Dermo1+/Cre_rep3.
Sample type RNA
 
Source name E15.5 lung
Organism Mus musculus
Characteristics background strain: 129/Sv
genotype: Dermo1+/Cre
developmental stage: E15.5
tissue: Lung
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent (Invitrogen) followed by DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser. Quantification by Nanodrop.
Label biotin
Label protocol Performed by Genome Quebec (Montreal, Qc, Canada)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description E15.5_Lung_Dermo1+/Cre_rep3.
SAMPLE3
Data processing The data were log2 transformed and normalised using quantile normalisation with lumi in R
 
Submission date Oct 24, 2013
Last update date Sep 02, 2014
Contact name Eric R Paquet
Organization name EPFL
Department Life sciences
Lab Naef lab
Street address Station 15 CH - 1015
City Lausanne
State/province Vaud
ZIP/Postal code 1015
Country Switzerland
 
Platform ID GPL6885
Series (1)
GSE51643 Critical requirement of ERK/MAPK signaling in respiratory tract development

Data table header descriptions
ID_REF
VALUE log2 transformed quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2659724 6.625009079 0.7788461
ILMN_2706226 6.523241195 0.9711539
ILMN_1217123 6.780514273 0.2040598
ILMN_2780205 12.9213878 0
ILMN_2713160 6.656024226 0.6709402
ILMN_2650094 6.665669431 0.6399572
ILMN_2703479 6.682734654 0.5833333
ILMN_2952493 6.62159308 0.792735
ILMN_2731592 7.137939015 0
ILMN_2729743 7.450594115 0
ILMN_1252621 8.774337579 0
ILMN_3162407 8.538294778 0
ILMN_2692952 7.097239126 0
ILMN_2910076 6.84309117 0.09508547
ILMN_2709047 9.185534036 0
ILMN_2718462 8.499868003 0
ILMN_2882078 9.460502674 0
ILMN_2882079 7.735860194 0
ILMN_2771368 6.679445488 0.5961539
ILMN_2724039 6.803401803 0.1581197

Total number of rows: 25697

Table truncated, full table size 792 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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