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Sample GSM1250036 Query DataSets for GSM1250036
Status Public on Aug 01, 2014
Title Map2k1+/+Map2k2+/+_rep2
Sample type RNA
 
Source name E12.5 placenta
Organism Mus musculus
Characteristics strain: 129cc
genotype: Map2k1+/+Map2k2+/+
developmental stage: E12.5
tissue: placenta
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent (Invitrogen) followed by DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser. Quantification by Nanodrop.
Label biotin
Label protocol Performed by Genome Quebec (Montreal, Qc, Canada)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description E12.5 placenta_Map2k1+/+Map2k2+/+_rep2
SAMPLE 2
Data processing The data were log2 transformed and normalised using quantile normalisation with lumi in R
 
Submission date Oct 24, 2013
Last update date Aug 01, 2014
Contact name Eric R Paquet
Organization name EPFL
Department Life sciences
Lab Naef lab
Street address Station 15 CH - 1015
City Lausanne
State/province Vaud
ZIP/Postal code 1015
Country Switzerland
 
Platform ID GPL6885
Series (1)
GSE51644 Microarray analysis of gene expression profiles in Map2k1+/-Map2k2+/- and Map2k1flox/-Map2k2+/-Tg+/Sox2Cre placentas

Data table header descriptions
ID_REF
VALUE log2 transformed quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2659724 6.44581393 0.8130342
ILMN_2706226 6.568675414 0.2596154
ILMN_1217123 6.514097641 0.4764957
ILMN_2780205 12.88160234 0
ILMN_2713160 6.432845429 0.8397436
ILMN_2650094 6.476977458 0.6613248
ILMN_2703479 6.482214037 0.6346154
ILMN_2952493 6.573452531 0.2350427
ILMN_2731592 7.072335698 0
ILMN_2729743 6.991373488 0
ILMN_1252621 7.74156849 0
ILMN_3162407 10.49006386 0
ILMN_2692952 6.778718177 0.01282051
ILMN_2910076 6.465402725 0.7211539
ILMN_2709047 8.26236814 0
ILMN_2718462 8.819684289 0
ILMN_2882078 10.91477098 0
ILMN_2882079 8.860608176 0
ILMN_2771368 6.523646762 0.4444444
ILMN_2724039 6.394082584 0.9273504

Total number of rows: 25697

Table truncated, full table size 800 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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