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Sample GSM12513 Query DataSets for GSM12513
Status Public on Oct 26, 2004
Title P840 cerebellum
Sample type SAGE
Anchor NlaIII
Tag Count 7601
Tag Length 10
 
Source name P840 C57BL6/J mouse cerebellum
Organism Mus musculus
Extracted molecule total RNA
 
Description C57BL6/J mice (2 males) were sacrificed and cerebella were quickly removed. Total RNA was isolated using Trizol. For the creation of the library, 40 micrograms of total RNA was used. cDNA was synthesized on oligo dT beads.
Enzyme: NlaIII
Vector: pZERO-1
Restriction sites 1 & 2: Sph1
Library treatment: non-normalized
 
Submission date Oct 28, 2003
Last update date Nov 19, 2008
Contact name Magdalena Popesco
E-mail(s) mpopesco@hotmail.com
Phone 614-292-7747
Organization name The Ohio State Universiy
Street address
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Platform ID GPL11
Series (1)
GSE1090 Mouse cerebellum

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
ATAATACATA 393 51703.72
GCTGCCCTCC 206 27101.70
ATACTGACAT 123 16182.08
GTGGCTCACA 73 9604.00
AAAAAAAAAA 50 6578.08
TCAGGCTGCC 44 5788.71
ACCAATGAAC 38 4999.34
GCACAACTTG 34 4473.10
GCTTCGTCCA 34 4473.10
CCCTTCTTCT 26 3420.60
AGCAGTCCCC 25 3289.04
GTGACCTGGC 25 3289.04
GAAGCAGGAC 24 3157.48
TGGTTGCTGG 23 3025.92
CTGAGGAAGT 22 2894.36
ATGACTGATA 20 2631.23
GAAAATGAGA 20 2631.23
TGGGTTGTCT 19 2499.67
GCCCGGGAAT 18 2368.11
CCAGAACAGA 17 2236.55

Total number of rows: 3714

Table truncated, full table size 72 Kbytes.




Supplementary data files not provided
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