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GEO accession:
Sample GSM125338
Query DataSets for GSM125338
Status
Public on Aug 08, 2007
Title
current4
Sample type
SAGE
Anchor
NlaIII
Tag Count
81964
Tag Length
10
Source name
Bronchial brushings, current smoker
Organism
Homo sapiens
Characteristics
Bronchial brushings, current smoker, Gender: M, Age: 68
Extracted molecule
polyA RNA
Description
Current smoker, BE-1 from Lonergan et al. (2006) PMID: 16809635
Submission date
Aug 08, 2006
Last update date
Nov 19, 2008
Contact name
Raj Chari
E-mail(s)
rchari@bccrc.ca
Organization name
BC Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Wan Lam Lab
Street address
675 West 10th Avenue
City
Vancouver
State/province
BC
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE5473
Effect of active smoking on bronchial epithelial transcriptome (24 SAGE libraries)
Data table header descriptions
TAG
SAGE_10mer
COUNT
RawTagCount
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
469
5722.02
AAAAAAAAAC
5
61.00
AAAAAAAAAG
2
24.40
AAAAAAAAAT
3
36.60
AAAAAAAAGA
5
61.00
AAAAAAACAA
2
24.40
AAAAAAACTC
1
12.20
AAAAAAACTG
1
12.20
AAAAAAAGAA
2
24.40
AAAAAAAGGG
1
12.20
AAAAAAATAG
1
12.20
AAAAAAATCA
13
158.61
AAAAAAATGT
1
12.20
AAAAAACCCA
17
207.41
AAAAAACTCC
2
24.40
AAAAAACTGG
1
12.20
AAAAAAGAAA
1
12.20
AAAAAAGGAC
2
24.40
AAAAAAGTAA
1
12.20
AAAAAAGTGA
1
12.20
Total number of rows:
23989
Table truncated, full table size
447 Kbytes
.
Supplementary data files not provided
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