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Sample GSM125344 Query DataSets for GSM125344
Status Public on Aug 08, 2007
Title former2
Sample type SAGE
Anchor NlaIII
Tag Count 222395
Tag Length 10
 
Source name Bronchial brushings, former smoker
Organism Homo sapiens
Characteristics Bronchial brushings, former smoker, Gender: M, Age: 69
Extracted molecule polyA RNA
 
Description Former smoker, BE-4A/4B combined from Lonergan et al. (2006) PMID: 16809635
 
Submission date Aug 08, 2006
Last update date Nov 19, 2008
Contact name Raj Chari
E-mail(s) rchari@bccrc.ca
Organization name BC Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Wan Lam Lab
Street address 675 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL4
Series (1)
GSE5473 Effect of active smoking on bronchial epithelial transcriptome (24 SAGE libraries)

Data table header descriptions
TAG SAGE_10mer
COUNT RawTagCount
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 867 3898.47
AAAAAAAAAC 2 8.99
AAAAAAAAAG 10 44.97
AAAAAAAAAT 8 35.97
AAAAAAAAGA 24 107.92
AAAAAAAAGC 1 4.50
AAAAAAAAGG 2 8.99
AAAAAAAATA 1 4.50
AAAAAAAATC 2 8.99
AAAAAAAATG 3 13.49
AAAAAAACAA 1 4.50
AAAAAAACCC 7 31.48
AAAAAAACCT 2 8.99
AAAAAAACGT 1 4.50
AAAAAAACTC 2 8.99
AAAAAAACTG 2 8.99
AAAAAAACTT 1 4.50
AAAAAAAGAA 3 13.49
AAAAAAAGCA 4 17.99
AAAAAAAGCT 2 8.99

Total number of rows: 50173

Table truncated, full table size 897 Kbytes.




Supplementary data files not provided

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