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Sample GSM1253685 Query DataSets for GSM1253685
Status Public on Jan 29, 2014
Title Control 4
Sample type RNA
 
Source name Urine: Extracellular Vesicles
Organism Homo sapiens
Characteristics disease state: control
Sex: M
age: 56
sample type: Urine Extracellular Vesicles
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol TargetAmp™ Nano-g™ Biotin-aRNA Labeling Kit for the Illumina® System, Epicentre (Cat.Num. TAN07924)
 
Hybridization protocol Whole-Genome Gene Expression Direct Hybridization Illumina Inc.'s protocol
Scan protocol BeadScan Illumina Inc.
Data processing Raw data were decoded by GenomeStudio Illumina Inc. And normalization was done (1) forcePositive background correction, (2) log2 transformation and (3) quantile normalization
Normalized data includes data only for probes (> 4000) that gave normalized signals. In addition, the data considered in this project are RNAs present in cellular vesicles, and as such, the number of probes present in these systems is quite small.
 
Submission date Oct 29, 2013
Last update date Jan 29, 2014
Contact name Ana Maria Aransay
E-mail(s) amaransay@cicbiogune.es
Phone 34944061325
Organization name CIC bioGUNE
Department Genome Analysis Platform
Street address Parque tecnologico de bizkaia, Building 801-A
City Derio
State/province BIZKAIA
ZIP/Postal code 48160
Country Spain
 
Platform ID GPL10558
Series (1)
GSE51843 A Pilot Study on the Potential of RNA-Associated to Urinary Vesicles as a Suitable Non-Invasive Source for Diagnostic Purposes in Bladder Cancer

Data table header descriptions
ID_REF
VALUE log2 quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 6.42331156 0.07662
ILMN_1705025 6.262122249 0.19221
ILMN_1726986 6.632984082 0.00649
ILMN_1698189 6.371024664 0.11818
ILMN_1720501 7.171564745 0
ILMN_1767349 6.389243646 0.10519
ILMN_2193980 6.695928489 0.0039
ILMN_2343048 6.542279551 0.02338
ILMN_1678409 6.306304602 0.16623
ILMN_2318685 6.377502829 0.11299
ILMN_1707925 6.492516716 0.04286
ILMN_2073969 6.347279355 0.13766
ILMN_2329958 6.45173868 0.06104
ILMN_1731610 6.579636225 0.01429
ILMN_1665945 6.331472071 0.15195
ILMN_2353978 6.620036728 0.00649
ILMN_1728883 6.403765377 0.09481
ILMN_1716832 6.440759418 0.06883
ILMN_1654414 6.460012834 0.05844
ILMN_1737418 6.361748475 0.12208

Total number of rows: 4264

Table truncated, full table size 135 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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