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Sample GSM1253690 Query DataSets for GSM1253690
Status Public on Jan 29, 2014
Title Patient 3
Sample type RNA
 
Source name Urine: Extracellular Vesicles
Organism Homo sapiens
Characteristics disease state: bladder cancer
Sex: M
age: 60
sample type: Urine Extracellular Vesicles
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol TargetAmp™ Nano-g™ Biotin-aRNA Labeling Kit for the Illumina® System, Epicentre (Cat.Num. TAN07924)
 
Hybridization protocol Whole-Genome Gene Expression Direct Hybridization Illumina Inc.'s protocol
Scan protocol BeadScan Illumina Inc.
Data processing Raw data were decoded by GenomeStudio Illumina Inc. And normalization was done (1) forcePositive background correction, (2) log2 transformation and (3) quantile normalization
Normalized data includes data only for probes (> 4000) that gave normalized signals. In addition, the data considered in this project are RNAs present in cellular vesicles, and as such, the number of probes present in these systems is quite small.
 
Submission date Oct 29, 2013
Last update date Jan 29, 2014
Contact name Ana Maria Aransay
E-mail(s) amaransay@cicbiogune.es
Phone 34944061325
Organization name CIC bioGUNE
Department Genome Analysis Platform
Street address Parque tecnologico de bizkaia, Building 801-A
City Derio
State/province BIZKAIA
ZIP/Postal code 48160
Country Spain
 
Platform ID GPL10558
Series (1)
GSE51843 A Pilot Study on the Potential of RNA-Associated to Urinary Vesicles as a Suitable Non-Invasive Source for Diagnostic Purposes in Bladder Cancer

Data table header descriptions
ID_REF
VALUE log2 quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 6.620036728 0.01429
ILMN_1705025 6.540920032 0.03506
ILMN_1726986 6.623916799 0.01299
ILMN_1698189 6.488019626 0.05714
ILMN_1720501 6.469143717 0.06623
ILMN_1767349 6.001807656 0.45584
ILMN_2193980 6.412587016 0.0974
ILMN_2343048 6.263861673 0.19351
ILMN_1678409 6.353507601 0.11948
ILMN_2318685 6.278169615 0.17922
ILMN_1707925 6.568459839 0.02208
ILMN_2073969 6.251326386 0.20519
ILMN_2329958 6.149362441 0.31169
ILMN_1731610 6.58318324 0.01818
ILMN_1665945 6.386591581 0.10649
ILMN_2353978 6.757333604 0.0026
ILMN_1728883 6.549945746 0.02987
ILMN_1716832 6.362265483 0.11688
ILMN_1654414 6.313870962 0.14675
ILMN_1737418 6.406062277 0.0987

Total number of rows: 4264

Table truncated, full table size 136 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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