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GEO accession:
Sample GSM126600
Query DataSets for GSM126600
Status
Public on Sep 19, 2006
Title
02-07-05_Deng_Mouse430_2_796
Sample type
RNA
Source name
796
Organism
Mus musculus
Characteristics
Strain: mixed background of 129/FVB/Black Swiss;Gender: female;Age: 796 & 801 (5 mon); I442 & I443 (6 mon); 1548 & T744 (2 mon); Tissue: Mammary glands
Biomaterial provider
Dr. Chuxia Deng' Lab/NIDDK/NIH
Extracted molecule
total RNA
Extraction protocol
RNA STAT-60 (TEL-TEST, Inc) to extract total RNA
Label
biotin
Description
A. Genotypes of mice: 796 (Brca1 +/co/MMTV-Cre) & 801 (Brca1 co/co/MMTV-Cre); I442 (Brca1 D11/D11;p53+/-) & I443 (Brca1 D+/+;p53+/-);1548 (Brca1 D11/D11;p53+/-) & T744 (Brca1 D+/+;p53+/-): B. Pregnant day 16.5 for 796 & 801; Lactation day 1 for 1548 & T744; Virgin for I442 &I443.
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 10, 2006
Last update date
Sep 19, 2006
Contact name
Cuiying Xiao
Organization name
NIH
Department
NIDDK
Lab
MGS/GDDB
Street address
10 Center Dr.
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL1261
Series (1)
GSE5861
Searching for Brca1 regulated X-linked genes
Data table header descriptions
ID_REF
Probe_set Id
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
1415983_at
2446.6
P
2.44E-4
1415984_at
10645.8
P
7.32E-4
1415985_at
1601.9
P
7.32E-4
1415986_at
1318.0
P
2.44E-4
1415987_at
6538.0
P
2.44E-4
1415988_at
458.2
P
0.001953
1415989_at
791.9
P
0.001953
1415990_at
9754.4
P
2.44E-4
1415991_a_at
2830.8
P
2.44E-4
1415992_at
478.9
P
0.001221
1415993_at
1288.9
P
2.44E-4
1415994_at
3879.7
P
2.44E-4
1415995_at
1307.9
P
2.44E-4
1415996_at
15662.6
P
2.44E-4
1415997_at
9197.9
P
2.44E-4
1415998_at
6235.4
P
2.44E-4
1415999_at
246.4
A
0.398926
1416000_a_at
17526.9
P
2.44E-4
1416001_a_at
106.6
A
0.466064
1416002_x_at
203.2
A
0.219482
Total number of rows:
45101
Table truncated, full table size
1218 Kbytes
.
Supplementary data files not provided
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