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GEO accession:
Sample GSM126602
Query DataSets for GSM126602
Status
Public on Sep 19, 2006
Title
02-07-05_Deng_Mouse430_2_I442
Sample type
RNA
Source name
I442
Organism
Mus musculus
Characteristics
Strain: mixed background of 129/FVB/Black Swiss;Gender: female;Age: 796 & 801 (5 mon); I442 & I443 (6 mon); 1548 & T744 (2 mon); Tissue: Mammary glands
Biomaterial provider
Dr. Chuxia Deng' Lab/NIDDK/NIH
Extracted molecule
total RNA
Extraction protocol
RNA STAT-60 (TEL-TEST, Inc) to extract total RNA
Label
biotin
Description
A. Genotypes of mice: 796 (Brca1 +/co/MMTV-Cre) & 801 (Brca1 co/co/MMTV-Cre); I442 (Brca1 D11/D11;p53+/-) & I443 (Brca1 D+/+;p53+/-);1548 (Brca1 D11/D11;p53+/-) & T744 (Brca1 D+/+;p53+/-): B. Pregnant day 16.5 for 796 & 801; Lactation day 1 for 1548 & T744; Virgin for I442 &I443.
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 10, 2006
Last update date
Sep 19, 2006
Contact name
Cuiying Xiao
Organization name
NIH
Department
NIDDK
Lab
MGS/GDDB
Street address
10 Center Dr.
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL1261
Series (1)
GSE5861
Searching for Brca1 regulated X-linked genes
Data table header descriptions
ID_REF
Probe_set Id
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
1415791_at
1054.3
P
0.00293
1415792_at
1300.7
P
2.44E-4
1415793_at
666.0
P
7.32E-4
1415794_a_at
2841.3
P
2.44E-4
1415795_at
238.8
P
2.44E-4
1415796_at
6546.6
P
2.44E-4
1415797_at
367.5
P
0.00415
1415798_at
157.4
A
0.27417
1415799_at
1468.5
P
2.44E-4
1415800_at
6141.2
P
2.44E-4
1415801_at
226.2
P
0.01416
1415802_at
2944.7
P
2.44E-4
1415803_at
396.3
P
2.44E-4
1415804_at
25.6
A
0.466064
1415805_at
24.2
A
0.219482
1415806_at
1248.5
P
2.44E-4
1416103_at
534.6
P
0.001953
1416104_at
881.9
P
0.001953
1416105_at
1639.5
P
2.44E-4
1416106_at
1004.1
P
2.44E-4
Total number of rows:
45101
Table truncated, full table size
1216 Kbytes
.
Supplementary data files not provided
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