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GEO accession:
Sample GSM126603
Query DataSets for GSM126603
Status
Public on Sep 19, 2006
Title
02-07-05_Deng_Mouse430_2_I443
Sample type
RNA
Source name
I443
Organism
Mus musculus
Characteristics
Strain: mixed background of 129/FVB/Black Swiss;Gender: female;Age: 796 & 801 (5 mon); I442 & I443 (6 mon); 1548 & T744 (2 mon); Tissue: Mammary glands
Biomaterial provider
Dr. Chuxia Deng' Lab/NIDDK/NIH
Extracted molecule
total RNA
Extraction protocol
RNA STAT-60 (TEL-TEST, Inc) to extract total RNA
Label
biotin
Description
A. Genotypes of mice: 796 (Brca1 +/co/MMTV-Cre) & 801 (Brca1 co/co/MMTV-Cre); I442 (Brca1 D11/D11;p53+/-) & I443 (Brca1 D+/+;p53+/-);1548 (Brca1 D11/D11;p53+/-) & T744 (Brca1 D+/+;p53+/-): B. Pregnant day 16.5 for 796 & 801; Lactation day 1 for 1548 & T744; Virgin for I442 &I443.
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 10, 2006
Last update date
Sep 19, 2006
Contact name
Cuiying Xiao
Organization name
NIH
Department
NIDDK
Lab
MGS/GDDB
Street address
10 Center Dr.
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL1261
Series (1)
GSE5861
Searching for Brca1 regulated X-linked genes
Data table header descriptions
ID_REF
Probe_set Id
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
1415840_at
6008.2
P
2.44E-4
1415841_at
2833.1
P
2.44E-4
1415842_at
218.1
P
0.008057
1415843_at
69.4
A
0.129639
1415844_at
2.3
A
0.888428
1415845_at
60.6
A
0.149658
1415846_a_at
23.0
A
0.633789
1415847_at
74.0
A
0.432373
1415848_at
65.3
A
0.466064
1415849_s_at
3881.9
P
7.32E-4
1415850_at
2478.9
P
2.44E-4
1415851_a_at
3432.5
P
2.44E-4
1415852_at
3241.4
P
7.32E-4
1415853_at
252.6
P
0.023926
1415854_at
115.3
P
0.001953
1415855_at
6994.5
P
2.44E-4
1415856_at
1115.6
P
2.44E-4
1415857_at
839.1
P
2.44E-4
1415858_at
5827.0
P
2.44E-4
1415859_at
274.5
P
0.010742
Total number of rows:
45101
Table truncated, full table size
1213 Kbytes
.
Supplementary data files not provided
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