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Sample GSM1267995 Query DataSets for GSM1267995
Status Public on Dec 04, 2014
Title Lung tissue from cigarette smoke-treated mice at 4 months of age, biological replicate 2
Sample type RNA
Source name Lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: female
tissue: lung
treatment: cigarette smoke-treated
age: 4 m
Treatment protocol Exposure to cigarette smoke as described in the paper
Growth protocol Animals housed under spf conditions
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Gene expression data from lung tissue from cigarette smoke-treated mice at 4 months of age, biological replicate 2
Data processing Data including background subtraction (GenomeStudioV2011.1 software, gene expression module version 1.9.0), removal of negative values by introducing an offset, quantile normalisation
Submission date Nov 19, 2013
Last update date Dec 04, 2014
Contact name Johannes Beckers
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE52509 Cigarette smoke-induced iBALT mediates macrophage activation in a B cell-dependent manner in COPD

Data table header descriptions
VALUE quantile normalized signal
Smoke_4m_2.Detection Pval

Data table
ID_REF VALUE Smoke_4m_2.Detection Pval
ILMN_1212607 33 0.2468672
ILMN_1212612 135 0
ILMN_1212619 60 0.001253133
ILMN_1212628 33 0.2243108
ILMN_1212632 40 0.05137845
ILMN_1212636 1005 0
ILMN_1212637 666 0
ILMN_1212645 24 0.7882205
ILMN_1212648 141 0
ILMN_1212653 401 0
ILMN_1212672 117 0
ILMN_1212682 28 0.5037594
ILMN_1212683 33 0.2343358
ILMN_1212685 25 0.7343358
ILMN_1212692 155 0
ILMN_1212693 243 0
ILMN_1212695 39 0.07894737
ILMN_1212698 21 0.8872181
ILMN_1212702 27002 0
ILMN_1212703 66 0.001253133

Total number of rows: 25697

Table truncated, full table size 585 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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